IL_7QGN_082

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7QGN|1|N|G|801, 7QGN|1|N|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0704

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7QGN|1|N|G|674
7QGN|1|N|A|675
7QGN|1|N|A|676
7QGN|1|N|A|677
7QGN|1|N|C|678
*
7QGN|1|N|G|799
7QGN|1|N|A|800
7QGN|1|N|G|801
7QGN|1|N|A|802
7QGN|1|N|U|803
7QGN|1|N|A|804
7QGN|1|N|G|805
7QGN|1|N|C|806

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain Y

50S ribosomal protein L15