IL_7QGN_184

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QGN|1|N|U|1851
7QGN|1|N|U|1852
7QGN|1|N|A|1853
7QGN|1|N|A|1854
7QGN|1|N|U|1855
7QGN|1|N|U|1856
7QGN|1|N|G|1857
7QGN|1|N|A|1858
7QGN|1|N|U|1859
7QGN|1|N|G|1860
*
7QGN|1|N|U|1882
7QGN|1|N|U|1883
7QGN|1|N|G|1884
7QGN|1|N|A|1885
7QGN|1|N|U|1886
7QGN|1|N|C|1887
7QGN|1|N|G|1888
7QGN|1|N|A|1889
7QGN|1|N|A|1890
7QGN|1|N|G|1891

Current chains

Chain N

23S rRNA

Nearby chains