IL_7QGR_022

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7QGR|1|0|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0744

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7QGR|1|0|G|446
7QGR|1|0|G|447
7QGR|1|0|A|448
7QGR|1|0|G|449
7QGR|1|0|G|450
*
7QGR|1|0|C|483
7QGR|1|0|G|484
7QGR|1|0|U|485
7QGR|1|0|U|486
7QGR|1|0|A|487
7QGR|1|0|C|488

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4

Chain G

30S ribosomal protein S16