IL_7QGR_070

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

7QGR|1|N|U|102

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_070 not in the Motif Atlas

Geometric match to IL_5J7L_248

Geometric discrepancy: 0.1217

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7QGR|1|N|G|81
7QGR|1|N|U|82
7QGR|1|N|A|83
7QGR|1|N|A|84
7QGR|1|N|G|85
*
7QGR|1|N|C|97
7QGR|1|N|G|98
7QGR|1|N|U|99
7QGR|1|N|U|100
7QGR|1|N|A|101
7QGR|1|N|U|102
7QGR|1|N|A|103
7QGR|1|N|A|104
7QGR|1|N|C|105

Current chains

Chain N

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L24

Chain l

50S ribosomal protein L29