IL_7QGR_072

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_072 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0628

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QGR|1|N|G|188
7QGR|1|N|G|189
7QGR|1|N|A|190
7QGR|1|N|A|191
7QGR|1|N|C|192
7QGR|1|N|U|193
7QGR|1|N|G|194
*
7QGR|1|N|C|201
7QGR|1|N|U|202
7QGR|1|N|A|203
7QGR|1|N|A|204
7QGR|1|N|G|205
7QGR|1|N|U|206
7QGR|1|N|A|207
7QGR|1|N|C|208

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15

Chain k

50S ribosomal protein L28

Chain q

50S ribosomal protein L35