IL_7QGR_077

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7QGR|1|N|A|504, 7QGR|1|N|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7QGR|1|N|G|481
7QGR|1|N|A|482
7QGR|1|N|A|483
7QGR|1|N|C|484
*
7QGR|1|N|G|496
7QGR|1|N|A|497
7QGR|1|N|G|498
7QGR|1|N|U|499
7QGR|1|N|G|500
7QGR|1|N|A|501
7QGR|1|N|A|502
7QGR|1|N|A|503
7QGR|1|N|A|504
7QGR|1|N|A|505
7QGR|1|N|G|506
7QGR|1|N|A|507
7QGR|1|N|A|508
7QGR|1|N|C|509

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain h

50S ribosomal protein L24