IL_7QGR_095

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_095 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1925

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7QGR|1|N|G|875
7QGR|1|N|C|876
7QGR|1|N|A|877
7QGR|1|N|A|878
7QGR|1|N|G|879
*
7QGR|1|N|C|898
7QGR|1|N|A|899
7QGR|1|N|A|900
7QGR|1|N|C|901
7QGR|1|N|C|902

Current chains

Chain N

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L16

Chain u

Transfer RNA; tRNA