IL_7QGR_111

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_111 not in the Motif Atlas

Geometric match to IL_5J7L_289

Geometric discrepancy: 0.0605

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QGR|1|N|A|1262
7QGR|1|N|U|1263
7QGR|1|N|A|1264
7QGR|1|N|A|1265
7QGR|1|N|G|1266
7QGR|1|N|U|1267
7QGR|1|N|A|1268
7QGR|1|N|A|1269
*
7QGR|1|N|U|2011
7QGR|1|N|G|2012
7QGR|1|N|A|2013
7QGR|1|N|A|2014
7QGR|1|N|A|2015
7QGR|1|N|U|2016
7QGR|1|N|U|2017

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain f

50S ribosomal protein L22

Chain n

50S ribosomal protein L32