IL_7QGR_131

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7QGR|1|N|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_131 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7QGR|1|N|U|1712
7QGR|1|N|A|1713
7QGR|1|N|U|1714
7QGR|1|N|G|1715
7QGR|1|N|U|1716
7QGR|1|N|A|1717
7QGR|1|N|G|1718
*
7QGR|1|N|U|1742
7QGR|1|N|G|1743
7QGR|1|N|A|1744
7QGR|1|N|A|1745
7QGR|1|N|A|1746

Current chains

Chain N

23S rRNA

Nearby chains