IL_7QGR_141

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7QGR|1|N|A|1938, 7QGR|1|N|U|1944, 7QGR|1|N|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_141 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1197

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

7QGR|1|N|C|1934
7QGR|1|N|G|1935
7QGR|1|N|A|1936
7QGR|1|N|A|1937
7QGR|1|N|A|1938
7QGR|1|N|U|1939
7QGR|1|N|U|1940
7QGR|1|N|C|1941
7QGR|1|N|C|1942
7QGR|1|N|U|1943
7QGR|1|N|U|1944
7QGR|1|N|G|1945
*
7QGR|1|N|C|1961
7QGR|1|N|C|1962
7QGR|1|N|U|1963
7QGR|1|N|G|1964

Current chains

Chain N

23S rRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain P

50S ribosomal protein L2

Chain u

Transfer RNA; tRNA