IL_7QGR_183

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGR_183 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0687

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7QGR|1|N|G|1666
7QGR|1|N|G|1667
7QGR|1|N|A|1668
7QGR|1|N|A|1669
7QGR|1|N|C|1670
7QGR|1|N|U|1671
7QGR|1|N|A|1672
7QGR|1|N|G|1673
7QGR|1|N|G|1674
*
7QGR|1|N|C|1990
7QGR|1|N|U|1991
7QGR|1|N|G|1992
7QGR|1|N|U|1993
7QGR|1|N|C|1994

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

50S ribosomal protein L14