IL_7QGU_049

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGU_049 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1028

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QGU|1|A|A|1302
7QGU|1|A|U|1303
7QGU|1|A|G|1304
7QGU|1|A|A|1305
7QGU|1|A|G|1306
7QGU|1|A|U|1307
7QGU|1|A|A|1308
7QGU|1|A|G|1309
*
7QGU|1|A|U|2040
7QGU|1|A|G|2041
7QGU|1|A|A|2042
7QGU|1|A|A|2043
7QGU|1|A|A|2044
7QGU|1|A|U|2045
7QGU|1|A|U|2046

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32