IL_7QGU_073

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7QGU|1|A|G|1830, 7QGU|1|A|A|1845, 7QGU|1|A|U|1849

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGU_073 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1734

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7QGU|1|A|U|1827
7QGU|1|A|G|1828
7QGU|1|A|C|1829
7QGU|1|A|G|1830
7QGU|1|A|A|1831
7QGU|1|A|A|1832
7QGU|1|A|G|1833
*
7QGU|1|A|C|1842
7QGU|1|A|G|1843
7QGU|1|A|A|1844
7QGU|1|A|A|1845
7QGU|1|A|G|1846
7QGU|1|A|U|1847
7QGU|1|A|A|1848
7QGU|1|A|U|1849
7QGU|1|A|A|1850

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain W

Small subunit ribosomal RNA; SSU rRNA