IL_7QH6_011

3D structure

PDB id

7QH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

7QH6|1|A|A|1986, 7QH6|1|A|U|1998, 7QH6|1|A|A|1999, 7QH6|1|A|C|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QH6_011 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.14

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QH6|1|A|G|1985
7QH6|1|A|A|1986
7QH6|1|A|G|1987
*
7QH6|1|A|C|1997
7QH6|1|A|U|1998
7QH6|1|A|A|1999
7QH6|1|A|C|2000
7QH6|1|A|C|2001

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial