IL_7QH6_029

3D structure

PDB id

7QH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

7QH6|1|A|G|2977

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QH6_029 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.5137

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7QH6|1|A|A|2946
7QH6|1|A|U|2947
7QH6|1|A|C|2948
*
7QH6|1|A|G|2976
7QH6|1|A|G|2977
7QH6|1|A|U|2978
7QH6|1|A|U|2979
7QH6|1|A|U|2980

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial