IL_7QH7_010

3D structure

PDB id

7QH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AAG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QH7_010 not in the Motif Atlas

Geometric match to IL_2H1M_003

Geometric discrepancy: 0.2218

The information below is about IL_2H1M_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

7QH7|1|A|A|1925
7QH7|1|A|A|1926
7QH7|1|A|G|1927
*
7QH7|1|A|U|1977
7QH7|1|A|A|1978
7QH7|1|A|U|1979

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial