IL_7QH7_012

3D structure

PDB id

7QH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QH7_012 not in the Motif Atlas

Geometric match to IL_5TBW_031

Geometric discrepancy: 0.1047

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7QH7|1|A|C|1948
7QH7|1|A|G|1949
7QH7|1|A|U|1950
7QH7|1|A|C|1951
*
7QH7|1|A|G|1966
7QH7|1|A|U|1967
7QH7|1|A|G|1968

Current chains

Chain A

16S ribosomal RNA

Nearby chains