IL_7QI4_082

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

7QI4|1|AA|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI4_082 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.1597

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7QI4|1|AA|G|1175
7QI4|1|AA|G|1176
*
7QI4|1|AA|U|1477
7QI4|1|AA|A|1478
7QI4|1|AA|C|1479

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain A3

Aurora kinase A-interacting protein

Chain AD

28S ribosomal protein S5, mitochondrial