IL_7QI4_085

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI4_085 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1739

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7QI4|1|AA|U|1208
7QI4|1|AA|C|1209
*
7QI4|1|AA|G|1355
7QI4|1|AA|A|1356
7QI4|1|AA|A|1357

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain Aw

A/A-tRNA

Chain Ax

Transfer RNA; tRNA