IL_7QI6_029

3D structure

PDB id

7QI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7QI6|1|A|C|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI6_029 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1211

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7QI6|1|A|C|2548
7QI6|1|A|C|2549
7QI6|1|A|A|2550
7QI6|1|A|G|2551
*
7QI6|1|A|C|2566
7QI6|1|A|G|2567

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial