IL_7QIW_015
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GGAC*GAGUCAAAGAGU(OMG)C
- Length
- 18 nucleotides
- Bulged bases
- 7QIW|1|2|G|395
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIW_015 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1093
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7QIW|1|2|G|373
7QIW|1|2|G|374
7QIW|1|2|A|375
7QIW|1|2|C|376
*
7QIW|1|2|G|387
7QIW|1|2|A|388
7QIW|1|2|G|389
7QIW|1|2|U|390
7QIW|1|2|C|391
7QIW|1|2|A|392
7QIW|1|2|A|393
7QIW|1|2|A|394
7QIW|1|2|G|395
7QIW|1|2|A|396
7QIW|1|2|G|397
7QIW|1|2|U|398
7QIW|1|2|OMG|399
7QIW|1|2|C|400
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 50S ribosomal protein L22, chloroplastic
- Chain a
- KOW domain-containing protein
- Chain n
- 60S ribosomal protein eL39
Coloring options: