IL_7QIW_026

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUG*CAUC

Length

7 nucleotides

Bulged bases

7QIW|1|2|A|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_026 not in the Motif Atlas

Geometric match to IL_3TD0_001

Geometric discrepancy: 0.2271

The information below is about IL_3TD0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7QIW|1|2|G|595
7QIW|1|2|U|596
7QIW|1|2|G|597
*
7QIW|1|2|C|604
7QIW|1|2|A|605
7QIW|1|2|U|606
7QIW|1|2|C|607

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain H

Ribosomal_L6e_N domain-containing protein

Chain I

Thaliana 60S ribosomal protein L7