IL_7QIW_033

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGU(A2M)GCUG

Length

17 nucleotides

Bulged bases

7QIW|1|2|A|943, 7QIW|1|2|G|947

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|813
7QIW|1|2|C|814
7QIW|1|2|OMG|815
7QIW|1|2|A|816
7QIW|1|2|A2M|817
7QIW|1|2|A|818
7QIW|1|2|G|819
*
7QIW|1|2|C|941
7QIW|1|2|U|942
7QIW|1|2|A|943
7QIW|1|2|G|944
7QIW|1|2|U|945
7QIW|1|2|A2M|946
7QIW|1|2|G|947
7QIW|1|2|C|948
7QIW|1|2|U|949
7QIW|1|2|G|950

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain N

60S ribosomal protein L13

Chain P

Ribosomal protein L15

Chain c

Putative 60S ribosomal protein L27a-3-like

Chain l

Ribosomal protein L37