IL_7QIW_045

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGGUAAA*UU(PSU)AAA(OMU)AG

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|1003
7QIW|1|2|G|1004
7QIW|1|2|G|1005
7QIW|1|2|G|1006
7QIW|1|2|U|1007
7QIW|1|2|A|1008
7QIW|1|2|A|1009
7QIW|1|2|A|1010
*
7QIW|1|2|U|1062
7QIW|1|2|U|1063
7QIW|1|2|PSU|1064
7QIW|1|2|A|1065
7QIW|1|2|A|1066
7QIW|1|2|A|1067
7QIW|1|2|OMU|1068
7QIW|1|2|A|1069
7QIW|1|2|G|1070

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain G

Ribosomal_L18_c domain-containing protein

Chain I

Thaliana 60S ribosomal protein L7

Chain L

60S ribosomal protein L10

Chain V

60S ribosomal protein eL21