IL_7QIW_074

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

7QIW|1|2|C|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_074 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.2964

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7QIW|1|2|G|1628
7QIW|1|2|G|1629
*
7QIW|1|2|U|1826
7QIW|1|2|C|1827
7QIW|1|2|C|1828

Current chains

Chain 2

25S rRNA

Nearby chains

Chain i

60S ribosomal protein eL34