IL_7QIW_100

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUG*C(OMG)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_100 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2772

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7QIW|1|2|G|2209
7QIW|1|2|A|2211
7QIW|1|2|U|2212
7QIW|1|2|G|2213
*
7QIW|1|2|C|2238
7QIW|1|2|OMG|2239
7QIW|1|2|C|2240

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8