IL_7QIW_105

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

7QIW|1|2|C|2290, 7QIW|1|2|C|2309

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|C|2280
7QIW|1|2|5MC|2281
7QIW|1|2|A|2282
7QIW|1|2|A|2283
7QIW|1|2|A2M|2284
7QIW|1|2|U|2285
7QIW|1|2|G|2286
7QIW|1|2|C|2287
7QIW|1|2|C|2288
7QIW|1|2|U|2289
7QIW|1|2|C|2290
7QIW|1|2|OMG|2291
7QIW|1|2|U|2292
*
7QIW|1|2|A|2306
7QIW|1|2|C|2307
7QIW|1|2|G|2308
7QIW|1|2|C|2309
7QIW|1|2|G|2310

Current chains

Chain 2

25S rRNA

Nearby chains