IL_7QIW_134

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_134 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2748

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7QIW|1|2|G|2897
7QIW|1|2|PSU|2898
7QIW|1|2|G|2899
*
7QIW|1|2|C|2910
7QIW|1|2|A|2911
7QIW|1|2|C|2912

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain o

Ubiquitin-like domain-containing protein