IL_7QIW_140

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_140 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.0972

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QIW|1|2|A|3015
7QIW|1|2|U|3016
7QIW|1|2|U|3017
*
7QIW|1|2|A|3043
7QIW|1|2|U|3044
7QIW|1|2|U|3045

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain X

60S ribosomal protein uL14