IL_7QIW_177

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

(PSU)(PSU)U*(A2M)GA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_177 not in the Motif Atlas

Homologous match to IL_8P9A_275

Geometric discrepancy: 0.3824

The information below is about IL_8P9A_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|PSU|1134
7QIW|1|2|PSU|1135
7QIW|1|2|U|1136
*
7QIW|1|2|A2M|1144
7QIW|1|2|G|1145
7QIW|1|2|A|1146

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L

60S ribosomal protein L10

Chain d

60S ribosomal protein L29