IL_7QIW_188

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AUC*GG(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIW_188 not in the Motif Atlas

Geometric match to IL_7Y2B_002

Geometric discrepancy: 0.2011

The information below is about IL_7Y2B_002

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7QIW|1|2|A|2632
7QIW|1|2|U|2633
7QIW|1|2|C|2634
*
7QIW|1|2|G|2652
7QIW|1|2|G|2653
7QIW|1|2|OMU|2654

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10

Chain V

60S ribosomal protein eL21