IL_7QIZ_005
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUGAGU(PSU)U*A(OMU)CAA(OMU)AAG
- Length
- 17 nucleotides
- Bulged bases
- 7QIZ|1|2|A|47
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.1511
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|2|C|29
7QIZ|1|2|U|30
7QIZ|1|2|G|31
7QIZ|1|2|A|32
7QIZ|1|2|G|33
7QIZ|1|2|U|34
7QIZ|1|2|PSU|35
7QIZ|1|2|U|36
*
7QIZ|1|2|A|43
7QIZ|1|2|OMU|44
7QIZ|1|2|C|45
7QIZ|1|2|A|46
7QIZ|1|2|A|47
7QIZ|1|2|OMU|48
7QIZ|1|2|A|49
7QIZ|1|2|A|50
7QIZ|1|2|G|51
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain l
- Ribosomal protein L37
- Chain p
- 60S ribosomal protein eL42
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