IL_7QIZ_007

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AU*AA(OMU)UGU

Length

8 nucleotides

Bulged bases

7QIZ|1|2|U|145

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1115

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|A|121
7QIZ|1|2|U|122
*
7QIZ|1|2|A|142
7QIZ|1|2|A|143
7QIZ|1|2|OMU|144
7QIZ|1|2|U|145
7QIZ|1|2|G|146
7QIZ|1|2|U|147

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain J

Ribosomal_L7Ae domain-containing protein

Chain P

Ribosomal protein L15