IL_7QIZ_009

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_009 not in the Motif Atlas

Geometric match to IL_1G1X_005

Geometric discrepancy: 0.1754

The information below is about IL_1G1X_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7QIZ|1|2|U|162
7QIZ|1|2|C|163
7QIZ|1|2|C|164
*
7QIZ|1|2|G|252
7QIZ|1|2|G|253

Current chains

Chain 2

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13

Chain j

Similar to 60S ribosomal protein L35