IL_7QIZ_017
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUGAAAU*ACGGA(PSU)A
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_017 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.1506
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QIZ|1|2|U|401
7QIZ|1|2|U|402
7QIZ|1|2|G|403
7QIZ|1|2|A|404
7QIZ|1|2|A|405
7QIZ|1|2|A|406
7QIZ|1|2|U|407
*
7QIZ|1|8|A|18
7QIZ|1|8|C|19
7QIZ|1|8|G|20
7QIZ|1|8|G|21
7QIZ|1|8|A|22
7QIZ|1|8|PSU|23
7QIZ|1|8|A|24
Current chains
- Chain 2
- 25S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L22, chloroplastic
- Chain g
- 60S ribosomal protein eL32
Coloring options: