IL_7QIZ_018

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GC*GCUC

Length

6 nucleotides

Bulged bases

7QIZ|1|2|U|636

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_018 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.3478

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QIZ|1|2|G|430
7QIZ|1|2|C|432
*
7QIZ|1|2|G|634
7QIZ|1|2|C|635
7QIZ|1|2|U|636
7QIZ|1|2|C|637

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33