IL_7QIZ_019

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGGC*GG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|G|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_019 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.2133

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

7QIZ|1|2|C|433
7QIZ|1|2|G|434
7QIZ|1|2|G|435
7QIZ|1|2|C|436
*
7QIZ|1|2|G|632
7QIZ|1|2|G|633

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33

Chain r

Ribosomal_L28e domain-containing protein