IL_7QIZ_027
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAUG*CC(OMU)G
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_027 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.1684
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7QIZ|1|2|C|678
7QIZ|1|2|A|679
7QIZ|1|2|U|680
7QIZ|1|2|G|681
*
7QIZ|1|2|C|802
7QIZ|1|2|C|803
7QIZ|1|2|OMU|804
7QIZ|1|2|G|805
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
Coloring options: