IL_7QIZ_033

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGU(A2M)GCUG

Length

17 nucleotides

Bulged bases

7QIZ|1|2|A|943, 7QIZ|1|2|G|947

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|C|813
7QIZ|1|2|C|814
7QIZ|1|2|OMG|815
7QIZ|1|2|A|816
7QIZ|1|2|A2M|817
7QIZ|1|2|A|818
7QIZ|1|2|G|819
*
7QIZ|1|2|C|941
7QIZ|1|2|U|942
7QIZ|1|2|A|943
7QIZ|1|2|G|944
7QIZ|1|2|U|945
7QIZ|1|2|A2M|946
7QIZ|1|2|G|947
7QIZ|1|2|C|948
7QIZ|1|2|U|949
7QIZ|1|2|G|950

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain N

60S ribosomal protein L13

Chain P

Ribosomal protein L15

Chain c

Ribosomal_L18e/L15P domain-containing protein

Chain l

Ribosomal protein L37