IL_7QIZ_035

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|G|870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_035 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.0939

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7QIZ|1|2|G|843
7QIZ|1|2|C|844
*
7QIZ|1|2|G|869
7QIZ|1|2|G|870
7QIZ|1|2|C|871

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain T

Ribosomal protein L19

Chain q

60S ribosomal protein eL43