IL_7QIZ_037

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAUA*UUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_037 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0923

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7QIZ|1|2|G|879
7QIZ|1|2|A|880
7QIZ|1|2|U|881
7QIZ|1|2|A|882
*
7QIZ|1|2|U|898
7QIZ|1|2|U|899
7QIZ|1|2|C|900

Current chains

Chain 2

25S rRNA

Nearby chains

Chain l

Ribosomal protein L37