IL_7QIZ_058

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|U|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_058 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.2235

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7QIZ|1|2|G|1219
7QIZ|1|2|U|1220
7QIZ|1|2|G|1221
*
7QIZ|1|2|C|1308
7QIZ|1|2|C|1309

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain K

60S ribosomal protein uL6

Chain U

60S ribosomal protein L18a

Chain o

Ubiquitin