IL_7QIZ_060

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

A(PSU)UAAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

7QIZ|1|2|A|1233

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|A|1229
7QIZ|1|2|PSU|1230
7QIZ|1|2|U|1231
7QIZ|1|2|A|1232
7QIZ|1|2|A|1233
7QIZ|1|2|G|1234
7QIZ|1|2|A|1235
7QIZ|1|2|C|1236
7QIZ|1|2|A|1237
7QIZ|1|2|G|1238
*
7QIZ|1|2|C|1295
7QIZ|1|2|C|1296
7QIZ|1|2|G|1297
7QIZ|1|2|A|1298
7QIZ|1|2|A|1299
7QIZ|1|2|U|1300

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain K

60S ribosomal protein uL6

Chain U

60S ribosomal protein L18a

Chain o

Ubiquitin