IL_7QIZ_063

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

7QIZ|1|2|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_063 not in the Motif Atlas

Geometric match to IL_5TBW_134

Geometric discrepancy: 0.3305

The information below is about IL_5TBW_134

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7QIZ|1|2|U|1409
7QIZ|1|2|U|1410
7QIZ|1|2|G|1411
*
7QIZ|1|2|U|1422
7QIZ|1|2|G|1423

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein eL32

Chain r

Ribosomal_L28e domain-containing protein