IL_7QIZ_065

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AAA*U(PSU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_065 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1571

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7QIZ|1|2|A|1471
7QIZ|1|2|A|1472
7QIZ|1|2|A|1473
*
7QIZ|1|2|U|1481
7QIZ|1|2|PSU|1482
7QIZ|1|2|U|1483

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain f

60S ribosomal protein eL31