IL_7QIZ_072

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

7QIZ|1|2|A|1564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_072 not in the Motif Atlas

Geometric match to IL_4WF9_094

Geometric discrepancy: 0.2601

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

7QIZ|1|2|G|1552
7QIZ|1|2|G|1553
*
7QIZ|1|2|C|1562
7QIZ|1|2|G|1563
7QIZ|1|2|A|1564
7QIZ|1|2|C|1565

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain D

60S ribosomal protein L8

Chain J

Ribosomal_L7Ae domain-containing protein

Chain P

Ribosomal protein L15