IL_7QIZ_080

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_080 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.1461

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QIZ|1|2|G|1679
7QIZ|1|2|A|1680
7QIZ|1|2|A|1681
*
7QIZ|1|2|U|1695
7QIZ|1|2|G|1696
7QIZ|1|2|U|1697

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain W

60S ribosomal protein eL22

Chain i

60S ribosomal protein eL34