IL_7QIZ_102

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_102 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2214

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7QIZ|1|2|G|2252
7QIZ|1|2|G|2253
7QIZ|1|2|G|2254
*
7QIZ|1|2|C|2268
7QIZ|1|2|PSU|2269
7QIZ|1|2|C|2270

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA