IL_7QIZ_108

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7QIZ|1|2|A|2400, 7QIZ|1|2|C|2987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_108 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0796

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QIZ|1|2|G|2399
7QIZ|1|2|A|2400
7QIZ|1|2|A|2401
*
7QIZ|1|2|U|2985
7QIZ|1|2|A|2986
7QIZ|1|2|C|2987
7QIZ|1|2|C|2988

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic