IL_7QIZ_110

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7QIZ|1|2|A|2812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_110 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.1117

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7QIZ|1|2|G|2415
7QIZ|1|2|A|2416
*
7QIZ|1|2|U|2811
7QIZ|1|2|A|2812
7QIZ|1|2|C|2813
7QIZ|1|2|C|2814

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain P

Ribosomal protein L15